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Monday, October 15, 2001
| 7:30-8:30 |
Registration/ Breakfast /Poster Setup |
| 8:30-8:45 |
Morning Facilitator: Welcome and Introduction |
| 8:45-9:45 |
Opening Remarks and Keynote Speaker:
Roland Stoughton, Ph.D.
Vice President, Informatics
Rosetta InPharmatics |
| 9:45-9:50 |
Facilitator introduces 1st Speaker |
| 9:50-10:20 |
“Application of Bayesian Decomposition to Gene Expression Analysis of Deletion Mutation Data”
Bidaut, G., Grant, J., Moloshok, T., Manion, F., Ochs, M.
Fox Chase Cancer Center, Philadelphia, PA |
| 10:20-10:35 |
Questions for the 1st Presenter |
| 10:35-10:50 |
Break |
| 10:50-10:55 |
Facilitator introduces 2nd Presenter |
| 10:55-11:25 |
“Using Functional Genomic Units to Corroborate User Experiments with the Rosetta Compendium”
Lin, S., Liao, X., McConnell, P., Vita, K., Carin, L., Goldschmidt, P.
Duke University Medical Center, Durham, NC |
| 11:25-11:40 |
Questions for the 2nd Presenter |
| 11:40-11:45 |
Facilitator introduces 3rd Presenter |
| 11:45-12:15 |
“Biology-Driven Clustering of Microarray Data: Applications to the NCI60 Data Set”
Coombes, K., Baggerly, K., Stivers, D., Wang, J.,
Gold, D., Sung, H., Lee, S.
Anderson Cancer Center, Houston, TX |
| 12:15-12:30 |
Questions for the 3rd Presenter |
| 12:30-2:00 |
Lunch Break: Poster and Vendor Fair |
| 2:00-2:05 |
Afternoon Facilitator: Introduces 4th presenter |
| 2:05-2:35 |
“Supervised and Hierarchical Unsupervised Neural Networks for Clustering Both Gene Expression Profiles and Samples”
Mateos, A., Herrero, J., Tamames, J., Dopazo, J.
Bioinformatics Unit, CNIO, Majadahonda, Madrid, Spain |
| 2:35-2:50 |
Questions for the 4th presenter |
| 2:50-3:00 |
Break |
| 3:00-3:05 |
Facilitator introduces 5th presenter |
| 3:05-3:35 |
“Extracting Global Structure from Gene Expression Profiles”
Fowlkes, C., Shan, Q., Belongie, S., Malik, J.
University of California, Berkeley, CA |
| 3:35-3:50 |
Questions for the 5th Presenter |
| 3:50-3:55 |
Facilitator introduces 6th Presenter |
| 3:55-4:25 |
“Fishing Expedition- A Supervised Approach to Extract Patterns from a Compendium of Expression Profiles”
Zhang, Z.1 Page, G.2 Zhang, H2
Johns Hopkins University School of Medicine, Baltimore, MD1
Medical University of South Carolina, Charleston, SC2 |
| 4:25-4:40 |
Questions for 6th Presenter |
| 4:40-4:45 |
Closing Remarks from Facilitator |
| 5:00-6:30 |
Reception and Poster Session |
Tuesday, October 16, 2001
| 7:30-8:30 |
Breakfast / Equipment test for oral presenters |
| 8:30-8:35 |
Morning Facilitator: Introduction of Keynote Speaker |
| 8:35-9:20 |
Keynote Speaker:
David J. Lockhart, Ph.D.
Salk Institute for Biological Studies |
| 9:20-9:25 |
Facilitator introduces 1st Presenter |
| 9:25-9:50 |
“Extracting Knowledge From Genomic Experiments By Incorporating The Biomedical Literature”
Sluka, J.
InPharmix Inc., Greenwood, IN |
| 9:50-10:00 |
Questions for the 1st Presenter |
| 10:00-10:05 |
Facilitator Introduces 2nd Presenter |
| 10:05-10:30 |
“Detecting Broad-Band and Selective Correlation Patterns Among Gene Expression and Drug Activity Data”
Dubitzky, W., Berrar, D., Granzow, M., Eils,R.
German Cancer Research Centre, Heidelberg, Germany |
| 10:30-10:40 |
Questions for the 2nd Presenter |
| 10:40-11:00 |
Break |
| 11:00-11:05 |
Facilitator introduces 3rd Presenter |
| 11:05-11:30 |
“Modeling Pharmacogenomics of the NCI-60 Anticancer Data Set: Utilizing Kernel PLS to Correlate the Microarray Data to Therapeutic Responses”
Dasgupta, N., Lin, S., Carin, L.
Duke University Medical Center, Durham, NC |
| 11:30-11:40 |
Questions for the 3rd Presenter |
| 11:40-11:45 |
Facilitator Introduces 4th Presenter |
| 11:45-12:10 |
“Analysis of Gene Expression Profiles and Drug Activity Patterns for the Molecular Pharmacology of Cancer”
Chang, J., Hwang, K., Zhang, B.
Seoul National University, Korea |
| 12:10-12:20 |
Questions for the 4th Presenter |
| 12:20-1:30 |
Lunch Break / Poster Fair |
| 1:30-1:35 |
Facilitator Introduces 5th Presenter |
| 1:35-2:05 |
“Analysis of Gene Expression and Drug Activity Data by Knowledge-based Association Mining”
Berrar, D., Dubitzky, W., Granzow, M., Eils, R.
German Cancer Research Center, Heidelberg, Germany |
| 2:05-2:20 |
Questions for the 5th Presenter |
| 2:20-2:25 |
Facilitator Introduces 6th Presenter |
| 2:25-2:55 |
“Evaluation of Current Methods of Testing Differential Gene Expressions and Beyond”
Li, Y.1, Zhang, L.2, Speer, M.1, Martin,E.1
Duke University Medical Center, Durham, NC 1,
North Carolina State University, Raleigh, NC 2 |
| 2:55-3:05 |
Break |
| 3:05-3:20 |
Facilitator leads voting for the Best Practice Award |
| 3:20-3:50 |
Closing Remarks:
John Weinstein, Ph.D.
National Cancer Institute |
| 3:50-4:00 |
Award Presentation |
Sponsors:
![Duke Center for Bioinformatics and Computational Biology [CB]](../sponsors/content/cbcb/image.jpg "Duke Center for Bioinformatics and Computational Biology [CB]")
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