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Thursday: November 13, 2003
| 7:00-8:00 |
Registration/ Breakfast /Poster Setup |
| 8:00-8:15 |
Morning Facilitator: Patrick Hurban
Welcome and Introduction of Keynote Speaker |
| 8:15-8:45 |
Keynote Speaker: David Beer
University of Michigan School of Medicine |
| 8:45-9:15 |
Introduction of Data Sets: Dr. Igor Jurisica
University of Toronto, Department of Computer Science |
| 9:15-9:20 |
Facilitator introduces 1st Speaker |
| 9:20-9:45 |
"Identification of Prognostic Genes, Combining Information Across Different Institutions and Oligonucleotide Arrays"
Morris, J.,Yin G., Baggerly, K., Wu, C., Zhang, L.
University of Texas MD Anderson Cancer Center
Houston, TX |
| 9:45-9:55 |
Questions for the 1st Presenter |
| 9:55-10:00 |
Facilitator introduces 2nd Presenter |
| 10:00-10:25 |
"Application of Survival and Multivariate Methods to Gene Expression Data Combined from Two Sources"
Robb, L., Stephens, R., Coleman, J.
GlaxoSmithKline, Statistical Sciences UK
Stevenage, UK |
| 10:25-10:35 |
Questions for the 2nd Presenter |
| 10:35-10:55 |
Morning Break |
| 10:55-11:00 |
Facilitator introduces 3rd Presenter |
| 11:00-11:25 |
"The Induction and Analysis of Gene Networks"
Livingston, G., Li, X., Li, G., Hao, L.
University of Massachusetts - Lowell
Lowell, MA |
| 11:25-11:35 |
Questions for the 3rd Presenter |
| 11:35-11:40 |
Facilitator introduces 4th Presenter |
| 11:40-12:05 |
"Bayesian Decomposition Classification Analysis of the CAMDA2003 Data Set"
Kossenkov, A., Bidaut, G., Ochs, M
Fox Chase Cancer Center
Phiadelphia, PA |
| 12:05-12:15 |
Questions for the 4th Presenter |
| 12:15-1:45 |
Lunch Break: Vendor Fair / Poster Fair |
| 1:45-1:50 |
Afternoon Facilitator: Dr. Stephen George
Introduces 5th presenter |
| 1:50-2:15 |
"Associating Microarray Data with a Survival Endpoint"
Jung, S., Owzar, K., George, S.
Department of Biostatistics and Bioinformatics
Duke Comprehensive Cancer Center
Durham, NC |
| 2:15-2:25 |
Questions for the 5th presenter |
| 2:25-2:30 |
Facilitator introduces 6th presenter |
| 2:30-2:55 |
"Making Sense of Human Lung Carcinomas Gene Expression Data: Integration and Analysis of Two Affymetrix Platform Experiments"
Lin, X., Park, D., Eslava, S., Lee, K., Lam, R., Zhu, L.
GlaxoSmithKline Pharmaceuticals R&D
Collegeville, PA |
| 2:55-3:05 |
Questions for the 6th Presenter |
| 3:05-3:25 |
Afternoon Break |
| 3:25-3:30 |
Facilitator introduces 7th Presenter |
| 3:30-3:55 |
"Weakest Link Models for Detecting Small Groups of Genes to Predict Lung Cancer Survival"
Richards, T., Day, R., Kaminski, N.
Simmons Center for Interstitial Lung Diseases
Pittsburgh, PA |
| 3:55-4:05 |
Questions for 7th Presenter |
| 4:05-4:10 |
Facilitator introduces 8th Presenter |
| 4:10-4:35 |
"Differential Correlation Detects Complex Associations Between Gene Expression and Clinical Outcomes in Lung Adenocarcinomas"
Shedden, K., Taylor, J.
Department of Statistics, University of Michigan
Ann Arbor, MI |
| 4:35-4:45 |
Questions for 8th Presenter |
| 4:45-5:00 |
Closing Remarks from Facilitator |
| 5:00-6:30 |
Reception |
Friday: November 14, 2003
| 7:30-8:00 |
Breakfast / Equipment test for oral presenters |
| 8:00-8:05 |
Morning Facilitator: Jennifer Shoemaker
Introduction of Keynote Speaker |
| 8:05-8:35 |
Keynote Speaker: Kenneth Beutow
Director, NCI Center for Bioinformatics |
| 8:35-8:40 |
Facilitator introduces 1st Presenter |
| 8:40-9:05 |
"Use of Microarray Data via Model-Based Classification in the Study and Prediction of Survival from Lung Cancer"
Jones, L., Ng, S., Ambroise, C., McLachlan, G.
Department of Mathematics, University of Queensland
Brisbane, Australia |
| 9:05-9:15 |
Questions for the 1st Presenter |
| 9:15-9:20 |
Facilitator Introduces 2nd Presenter |
| 9:20-9:45 |
"Microarray Data Integration and Machine Learning Techniques for Lung Cancer Survival Prediction"
Berrar, D., Sturgeon, B., Bradbury, I., Dubitzky, W.
School of Biomedical Sciences
University of Ulster at Coleraine
Northern Ireland |
| 9:45-9:55 |
Questions for the 2nd Presenter |
| 9:55-10:00 |
Facilitator introduces 3rd Presenter |
| 10:00-10:25 |
"Microarray Data Analysis of Survival Times of Patients with Lung Adenocarcinomas Using ADC and K-Medians Clustering"
Zhou, W., Wu, W., Palmer, N., Mower, E., Daniels, N., Cowen, L., Blumer, A.
Computer Science, Tufts University
Medford, MA |
| 10:25-10:35 |
Questions for the 3rd Presenter |
| 10:35-10:55 |
Morning Break |
| 10:55-11:00 |
Facilitator Introduces 4th Presenter |
| 11:00-11:25 |
"Maximum Expected Utility Modeling of the Conditional Probability of Adenocarcinoma"
Friedman, C., Cao, W.
Courant Institute, NYU
New York, NY |
| 11:25-11:35 |
Questions for the 4th Presenter |
| 11:35-11:40 |
Facilitator Introduces 5th Presenter |
| 11:40-12:05 |
"Neural Network Classifiers and Gene Selection Methods for Microarray Data on Human Lung Adenocarcinoma"
Zheng, G., George, E.O., Narasimhan, G.
School of Computer Science, Florida International University
Miami, FL |
| 12:05-12:15 |
Questions for the 5th Presenter |
| 12:15-1:45 |
Lunch Break / Vendor Fair / Poster Fair |
| 1:45-1:50 |
Afternoon Facilitator: Michael Ochs
Introduces 6th Presenter |
| 1:50-2:15 |
"Higher Dimensional Approach for Classification of Lung Cancer Microarray Data"
Crimins, F., Dimitri, R., Klein, T., Palmer, N., Cowen, L.
Department of Computer Science, Tufts University
Medford, MA |
| 2:15-2:25 |
Questions for the 6th Presenter |
| 2:25-2:30 |
Facilitator Introduces 7th Presenter |
| 2:30-2:55 |
"A Combinatorial Approach to the Analysis of Differential Gene Expression Data: The Use of Graph Algorithms for Disease Prediction and Screening"
Langston, M., Lin, L., Peng, X., Baldwin, N., Symons, C., Zhang, B.
University of Tennessee
Knoxville, TN |
| 2:55-3:05 |
Questions for the 7th Presenter |
| 3:05-3:25 |
Break |
| 3:25-3:30 |
Facilitator Introduces 8th Presenter |
| 3:30-3:55 |
"Entropy and Survival-based Weights to Combine Affymetrix Array Types in the Analysis of Differential Expression and Survival"
Hu, J., Yin, G., Morris, J., Zhang, L., Wright, F.
Department of Biostatistics, University of North Carolina
Chapel Hill, NC |
| 3:55-4:05 |
Questions for the 8th Presenter |
| 4:05-4:10 |
Facilitator leads voting for the Best Practice Award |
| 4:10-4:40 |
Closing Remarks: Michael Ochs
Manager, Bioinformatics Facility
Fox Chase Cancer Center |
| 4:40-4:45 |
Award Presentation |
Sponsors:
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